DiffBind warning in Galaxy

Question

[msulaim]

I am attempting to run DiffBind through Galaxy on peaks (CTCF) called for replicates of K562 and GM12878 and encounter the following issue:

WARNING: ignoring environment value of R_HOME [1] "en_US.UTF-8" Loading required package: GenomicRanges Loading required package: methods Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The fo

Any suggestions?

Answer 1

[Devon Ryan]

You can safely ignore that warning.

Answer 2

[msulaim]

Whenever I try to view the PDF output, it states, "Failed to load PDF document." I have tried a different browser. The PDF seems to be damaged/corrupt.

"empty" is shown beneath both of the analyses in my history.

[Devon Ryan]

You should contact your Galaxy administrator. Only he/she will be able to look in the logs and diagnose what's going on.