Joining multiple paired end-reads in qiime
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Entering edit mode
5.5 years ago
espop23 ▴ 60

Hello,

I am trying to join multiple paired end-reads in qiime. Essentially, I have a folder called teaser that has all my forward and end reads, which all start with sample and then have numbered identifiers. I have used the following code:

$ multiple_join_paired_ends.py -i teaser/sample -o joined*

But get errors: ValueError: Invalid filename found for splitting on input for file

Is there something I have to add to my script in the terminal to make it work?

Thank you!

qiime paired sequence • 2.5k views
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1
Entering edit mode

multiple_join_paired_ends.py -i teaser/ -o joined

Not sure, why you've sample in teaser

I'm assuming joined output folder exists. If not, create it, and try.

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