Question: work with PPI network
0
gravatar for ak_elahi
3.2 years ago by
ak_elahi0
ak_elahi0 wrote:

I am working in clustering on PPI network , how I can work with data set DIP? how use the information in DIP or Krogan or yeast data set

alignment • 897 views
ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by ak_elahi0
  • What are you trying to achieve?
  • What is your biological question?
  • What have you done already?
ADD REPLYlink written 3.2 years ago by Michael Dondrup46k
0
gravatar for Jean-Karim Heriche
3.2 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche19k wrote:

Given that the data is a graph, you could apply a graph node clustering algorithm such as MCL, spectral clustering or any number of community detection algorithms. I don't quite understand the question about how to work with DIP. Just download the data and if needed convert it to a suitable format for use by your clustering software.

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by Jean-Karim Heriche19k
0
gravatar for ak_elahi
3.2 years ago by
ak_elahi0
ak_elahi0 wrote:

tanks I don't know that how apply data in data set for start .I don't know information in DIP or other data set and how use of data set

ADD COMMENTlink written 3.2 years ago by ak_elahi0
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