How To Remove Contamination From Ngs 454 Sequencing Data

Question

[Amit]

hi

i am new in the field of ngs data analysis and want to learn about that. i have some 454 sequencing reads but that contains mixed and contaminated sequenced reads from source and repeats that i want to remove or partition them. please suggest me any solution if anyone knows.

thank you in advance.

Answer 1

[SES]

You can use DeconSeq, as it was specifically designed for removing contamination from 454 reads.