I am calling the CNVs from canine data using ExomeCNV. The organism has 38 pairs of chromosome and so, the CNV plot generated at the end could not acomodate all. Therefore, I am running the Rscript in batches of 2 where the each set has 20 chromosome. while running the second batch, I came across the following error: Error in 1:max(ecnv$copy.number, na.rm = TRUE) : result would be too long a vector Calls: do.plot.eCNV -> do.plot.one.eCNV In addition: Warning message: In max(ecnv$copy.number, na.rm = TRUE) : no non-missing arguments to max; returning -Inf Execution halted
This was encountered for just one sample out of 8. I narrowed down the problematic chromosome and found that it has 4347 calls which is NOT different from other samples. But I could not find the exact reason. Can anyone help me interpret and resolve it?
