My ultimate goal is to locate the binding sites of a specific transcription factor. Is there a program that will allow me to search based on the factor's name or by the consensus binding site (it's only 7 nucleotides long). I've tried working with NestedMICA but am now having trouble opening the xms file that results. The manual for NestedMICA suggests using the MotifExplorer tool, but that does not seem to exist anymore? Thanks for any helpful insights!