Question: Different Pfam and SMART protein domains..
gravatar for kajaenilsen
4.5 years ago by
kajaenilsen10 wrote:


I'm using the Pfam and SMART databases to identify protein domains in a few protein sequences (known sequences). For EGR1 and EGR2 i get different protein domains. Pfam identifies one (EGR2) and three (EGR1) domains of unknown function, while SMART identifies 3 zinc finger domains. The domains of unknown function is not even in the same position in the sequences as the zinc finger domains are in the annotations..
How do I interpret this?


pfam protein domain smart • 1.9k views
ADD COMMENTlink written 4.5 years ago by kajaenilsen10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1191 users visited in the last hour