Allele Frequency Calculator results

Question

[786]

Hi I'm using Allele Frequency Calculator of 1000 Genome browser. I retrieved the allele frequency of 6:20534457-21232404 region from it and obtained the following results. I just wanted to ask which frequency threshold I should select to call a snp associated with risk??

CHR POS ID  REF ALT PJL_TOTAL_CNT   PJL_ALT_CNT PJL_FRQ
6   20534461    rs557361814 G   T   192 0   0
6   20534514    rs10708068  GA  G   192 38  0.20
6   20534516    rs111820227 G   T   192 0   0
6   20534544    rs543723898 C   G   192 0   0
6   20534554    rs114171057 C   G   192 0   0
6   20534572    rs145516342 T   A   192 0   0
6   20534583    rs541267947 A   C   192 0   0
6   20534596    rs559585078 C   G   192 0   0
6   20534604    rs533087725 T   C   192 0   0
6   20534651    rs149181889 A   T   192 0   0
6   20534655    rs563308663 G   C   192 0   0
6   20534664    rs530395154 G   A   192 0   0
6   20534700    rs549652347 C   A   192 0   0
6   20534703    rs545943567 GA  G   192 0   0
6   20534719    rs567820490 C   T   192 0   0
6   20534744    rs534986100 C   T   192 0   0
6   20534749    rs180859908 G   T   192 0   0
6   20534759    rs115926208 G   A   192 0   0
6   20534777    rs538764883 T   C   192 0   0
6   20534786    rs143352371 T   A   192 9   0.05
6   20534808    rs41271303  A   G   192 0   0
6   20534899    rs536213002 C   T   192 0   0
6   20534918    rs140741461 G   T   192 0   0
6   20534965    rs116186936 G   A   192 0   0
6   20534971    rs57228197  G   A   192 0   0
6   20534974    rs11963450  T   C   192 9   0.05
6   20534987    rs577876243 A   G   192 0   0
6   20534991    rs184975546 G   A   192 0   0
6   20534992    rs563188326 G   A   192 0   0
6   20534999    rs530534468 G   T   192 0   0
6   20535100    rs548741094 G   A   192 0   0
6   20535127    rs76977794  T   G   192 0   0
6   20535140    rs115275168 G   A   192 0   0
6   20535149    rs76669322  G   A   192 0   0
6   20535222    rs190684118 T   C   192 1   0.01
6   20535248    rs538802082 G   A   192 1   0.01
6   20535286    rs187150785 A   G   192 0   0
6   20535290    rs569293826 A   G   192 0   0
6   20535291    rs536747510 C   G   192 0   0
6   20535418    rs981043    C   T   192 0   0
6   20535455    rs138174159 G   A   192 0   0
6   20535519    rs534931917 C   A   192 0   0
6   20535534    rs981042    G   T   192 0   0
6   20535546    rs191541477 G   A   192 0   0
6   20535564    rs544832841 T   C   192 0   0
6   20535585    rs557107086 C   T   192 0   0
6   20535598    rs575274242 G   C   192 0   0
6   20535619    rs542695077 A   G   192 0   0
6   20535669    rs141845346 A   G,T 192 0,0 0.00