Question: Problem in installing Maker
0
gravatar for allyson1115ar
3.6 years ago by
allyson1115ar20 wrote:

Hi, I'm trying to install Maker using Linux. I have installed repeatmasker but when I run perl Build.PL in maker, the system tell me that repeatmasker is not installed. May I know how can I solve this issue? Thanks.

Checking external program dependencies... requires: ! RepeatMasker is not installed

maker repeatmasker annotation • 1.3k views
ADD COMMENTlink written 3.6 years ago by allyson1115ar20

Is repeatmasker in your $PATH?

ADD REPLYlink written 3.6 years ago by Devon Ryan92k

I'm new in this area. May I know how can I check the path?

ADD REPLYlink written 3.6 years ago by allyson1115ar20

Type echo $PATH.

ADD REPLYlink written 3.6 years ago by Devon Ryan92k

This is the result after i typed echo $PATH

/home/allyson1115/torch/install/bin:/home/allyson1115/torch/install/bin:/home/allyson1115/anaconda2/bin:/home/allyson1115/torch/install/bin:/home/allyson1115/torch/install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/bin/RepeatMasker:/usr/local/bin/RepeatMasker:/usr/local/bin/RepeatMasker:/usr/local/bin/RepeatMasker:/usr/local/bin/RepeatMasker:/usr/local/bin/RepeatMasker

I'm still couldn't fixed it :(

ADD REPLYlink written 3.6 years ago by allyson1115ar20

May I know how can I add the path into Maker? Both of my folder directory are as such: /usr/local/bin/maker and /usr/local/bin/RepeatMasker

ADD REPLYlink written 3.6 years ago by allyson1115ar20

Those are likely already in your path.

ADD REPLYlink written 3.6 years ago by Devon Ryan92k

Hello allyson1115ar!

It appears that your post has been cross-posted to another site: http://stackoverflow.com/questions/36966695

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 3.6 years ago by Pierre Lindenbaum124k

I have deleted that question. Thanks.

ADD REPLYlink written 3.6 years ago by allyson1115ar20
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