How to build GO dengrogram using already enriched GO term?
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6.2 years ago
mqding • 0

I have a question. I have a GO enrichment data for example, several significant GO terms, How can I build GO dendrogram using these significant GO terms with p-value? Please recommand some software.Thanks a lot!

rna-seq • 1.7k views
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6.2 years ago
Benn 8.3k

Do you mean an Acyclic graph? You can make them with topGO in R.

http://bioconductor.org/packages/release/bioc/html/topGO.html

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6.2 years ago

Have a look at clusterProfiler from Bioconductor, I think you mean something like this: http://bioconductor.org/packages/release/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html#plotgograph

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6.2 years ago
mqding • 0

Thanks for the answers. But I am analyzing the data not from the model plants. Is it ok to use the above two software?

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