Lumi error when using importMethylIDAT
0
0
Entering edit mode
8.0 years ago
rasii ▴ 10

Hi all,

I'm trying to analyse some methylation data that was taken from Illumina methylation EPIC microarray using lumi and I get the following error when I try to import my data. What could I be doing wrong? Any help is highly appreciated..

library("lumi", lib.loc="C:/R-3.3.0beta/library")

sampleInfo=read.csv("E:/A/200357150012/SAM18211 mthylation EPIC.txt",sep="\t", header=T, stringsAsFactors=F)

data=importMethyIDAT(sampleInfo, dataPath = getwd(), lib = NULL, bigMatrix=FALSE, dir.bigMatrix='.') Error in importMethyIDAT(sampleInfo, dataPath = getwd(), lib = NULL, bigMatrix = FALSE, : 'SENTRIX_POSITION' and 'SENTRIX_BARCODE' or 'SENTRIX_ID' and are required in 'sampleInfo'!

Thanks,

Rasi

lumi methylation illumina EPIC microarray • 1.7k views
ADD COMMENT

Login before adding your answer.

Traffic: 2660 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6