Question: [BioC] huex10stv2cdf error
0
gravatar for 盛夏
3.8 years ago by
盛夏0
United States
盛夏0 wrote:

Hi everybody!

I am trying to read several .cel files from Affymetrix Exon Arrays with the R program. I have loaded the affy, affyio, oligo and pd.huex.1.0.st.v2 packages but when I write the command read.affybatch(dir()[1]) it does not work and the following message appears:

AffyBatch object
size of arrays=2560x2560 features (17 kb)
cdf=HuEx-1_0-st-v2 (??? affyids)
number of samples=1
Error in getCdfInfo(object) :
Could not obtain CDF environment, problems encountered:
Specified environment does not contain HuEx-1_0-st-v2
Library - package huex10stv2cdf not installed
Bioconductor - huex10stv2cdf not available
In addition: Warning messages:
1: In read.affybatch(dir()[1]) :
Incompatible phenoData object. Created a new one.
2: missing cdf environment! in show(AffyBatch)

I have looked for the huex10stv2cdf package through the internet but I cannot find it.

Moreover if I write read.celfile(dir()[1]), a huge list appears without any information even when I ask for it.

Could anyone help me, please? Any advice would be really welcome.

Thanks

Maria

R software error • 1.1k views
ADD COMMENTlink modified 3.8 years ago by genomax78k • written 3.8 years ago by 盛夏0

Moderators can you please remove the wrong tag and modify the query? @OP please try to modify the query so that others can read it properly and also the tag for tutorial is not errors centric rather informative resource. Please change it.

ADD REPLYlink written 3.8 years ago by ivivek_ngs4.9k
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