I'm looking for VCFs that has sample-level allelic depth information.
Something similar to GATK Haplotype Caller. I would like to know the number of reads supporting each SNP per sample.
Is there a VCF file in the 1000 Genomes FTP that contains this information (phase 3 low coverage samples is preferred)
Or did 1000 Genomes not report the allelic depth for the variants? I tried looking around and the only think I could find was a VCF with DP annotation (depth of coverage)
I need the depth of coverage of each allele. I know they phased the genomes so what gives!