Metabolic network database
3
0
Entering edit mode
8.5 years ago
Na Sed ▴ 310

As you know BioGrid is a database that contains the information of relations between genes, i.e. network of genes. Now, I was wondering if we have such database for metabolite data. I appreciate if you would help me. Indeed, I want to make a network between metabolites and I do not know any database that I can use.

metabolite network biogrid • 2.6k views
ADD COMMENT
3
Entering edit mode
8.5 years ago
natasha.sernova ★ 4.0k

I hope this will help you:

It's a paper-summary from 2015:

http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0462-y

A list of different databases:

http://metabolomicssociety.org/resources/metabolomics-databases

A shorter list of databases:

https://en.wikipedia.org/wiki/List_of_biological_databases#Metabolic_pathway_and_Protein_Function_databases

You are not the first person who was going to create such a database, some people shared their views on the topic:

https://en.wikipedia.org/wiki/Metabolic_network_modelling

ADD COMMENT
1
Entering edit mode
8.5 years ago
ivivek_ngs ★ 5.2k

You can take a look at ipath2 , reactome and consensuspathdb, they should be having metabolic pathways for gene-gene relationships to consequent pathways. Even IPA has it but you need a commercial license for IPA.

ADD COMMENT
1
Entering edit mode
8.3 years ago

WikiPathways is an extensive pathway database which also contains many metabolic pathways.

ADD COMMENT

Login before adding your answer.

Traffic: 2067 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6