Entering edit mode
7.9 years ago
ahmad.iut
▴
90
Hello Biostars, I am analyzing the RNA-seq data of a non-model plant (de novo) but after assembly, differential gene expression, and GO mapping I need a reliable pipeline for GO enrichment and network analysis. I have seen some papers using Cytoscape (BINGO, Enrichment Map, ...) but I do not know how to prepare my data for these tools. Most of the software for these reasons just do these kind of analysis for model organisms. Please give me your experiences about de nove transciptome analysis? Many thanks,