FASTA output in blast ?
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8.0 years ago
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I would like to output the query sequences which have a hit in a blast research. There is an option to make that ?? or I have to write a script to fetch theses sequences in my initial dataset ??

blasta fasta • 2.3k views
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blastdbcmd -help

or IMO much faster option (in case you have a fasta file from which your blast db was made):

samtools faidx
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