Question: FASTA output in blast ?
gravatar for Picasa
4.8 years ago by
Picasa590 wrote:

I would like to output the query sequences which have a hit in a blast research. There is an option to make that ?? or I have to write a script to fetch theses sequences in my initial dataset ??

blasta fasta • 1.8k views
ADD COMMENTlink written 4.8 years ago by Picasa590
blastdbcmd -help

or IMO much faster option (in case you have a fasta file from which your blast db was made):

samtools faidx
ADD REPLYlink modified 4.8 years ago • written 4.8 years ago by 5heikki9.3k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2539 users visited in the last hour