Question: FASTA output in blast ?
1
gravatar for Picasa
4.8 years ago by
Picasa590
Picasa590 wrote:

I would like to output the query sequences which have a hit in a blast research. There is an option to make that ?? or I have to write a script to fetch theses sequences in my initial dataset ??

blasta fasta • 1.8k views
ADD COMMENTlink written 4.8 years ago by Picasa590
1
blastdbcmd -help

or IMO much faster option (in case you have a fasta file from which your blast db was made):

samtools faidx
ADD REPLYlink modified 4.8 years ago • written 4.8 years ago by 5heikki9.3k
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