Entering edit mode
12.0 years ago
Purpleone
▴
90
What is a standard approach to estimating the (phenotypic) variance explained by SNPs in a case/control GWAS?
I know about GCTA, but it's very computationally intensive. Are there simpler methods?
Do plink also feasible for plant quantitative traits or it works only for binary phenotypes. I've tried with PLINK but at last in a unsuccessful manner. I want to try with it to confirm my GAPIT results but not finding a good way to analysis. Thanks