Question: Converting files (mpileup or sync to genepop)
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2.9 years ago by
as138950 wrote:

Hi there, I'm something of a novice in the bioinformatics field and am hoping someone can help? I've got some SNP data from ddRAD pooled seq in the format of the output from samtools (.mpileup) and I also have .sync (allele frequencies from all populations for the reference genome) and_rc (details of each SNP) output files from Popoolation2 software. I was wanting to screen for outlier loci using Lositan which requires a Genepop input file. How do I convert from these files? (I've looked at PGDSpider but it's not clear to me if it's possible). Many thanks!

sequencing snp • 1.2k views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by as138950
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