I am using DSK to count the k-mers that are present in multiple fasta files. I would like to get the list of all solid k-mers that were found in all files.
The command line interface has a "-solid-kmers-out" argument which, I assume, should output this list in a file. However, even when I set a value, it does not seem to output a file. Am I using it correctly?
Also, is there a programmatic way to go from the integer representation of k-mers to their string representation?
Thanks for your help, Alex