Question: WGNCA RNASeq without time series
gravatar for debitboro
4.8 years ago by
debitboro190 wrote:

Hi all,

I'm new in using WGCNA. I have RNASeq data without time series (just tumor vs normal tissues, let's say 2 conditions). I have already done the DESeq2 normalization. Now, my question is: Can I use WGCNA on my data even without time series ?

any idea, guidance, or suggestion ?

rna-seq time series wgcna • 1.5k views
ADD COMMENTlink modified 2.9 years ago by Biostar ♦♦ 20 • written 4.8 years ago by debitboro190

You don't need a time series for running WGCNA.

ADD REPLYlink written 4.8 years ago by chris86350
gravatar for WouterDeCoster
4.8 years ago by
WouterDeCoster45k wrote:

As said by chris you don't need time series, you just need numeric or categoric trait info to perform correlation with.

ADD COMMENTlink written 4.8 years ago by WouterDeCoster45k
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