I have recently studied this paper that says in order to discriminate between valid transcript sequences and incorrectly assembled sequences, we used TransDecoder program. I know the usage of Transdecoder program, but I'm not sure about the above sentence. Could you please clarify me about the valid transcripts and Transdecoder tool? The author's mean is each transcript doesn’t translate to amino acid sequence is considered as incorrectly assembled transcript?
Thank you in advance