Question: Alternative splicing using rMATS
gravatar for Bionic
4.8 years ago by
United States
Bionic0 wrote:

I would like to study alternative splicing profile of several patients.I need a tool that takes bam file as input and creates output with number of splice variants for each gene ( ex. exon skipping, intron retention, mutually exclusive, alternative 3' acceptor site...). I tried MISO but it keeps giving me error and I was not able to troubleshoot. I found rMATS easy to run but it compares two samples at a time.

Any suggestion would be appreciated!!!

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