Proteome Analysis Tools

Question

[avinashdhar123]

Hiii...I have around 70 bacterial proteomes (.fsa format) files. I need to do their blast. Can anyone suggest me some relevant stand alone tools that give a graphical representation of the result as well. I tried using CMG biotools but it didn't prove to be of any help.

Answer 1

[Mo]

I recommend pClust You can use the server here http://prodata.swmed.edu/pclust/server.cgi You can read about it here http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3590580/

[avinashdhar123]

Thnaks a lot for your help Mo. But this server to accepts a single file at a time. I need to upload all the 70 proteomes in one go and perform BLAST .. Any suggestions ?

[Mo]

@avinashdhar123 there you have single sequence and multi sequence tab, look at below "Input your query as"