Proteome Analysis Tools
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4.9 years ago

Hiii...I have around 70 bacterial proteomes (.fsa format) files. I need to do their blast. Can anyone suggest me some relevant stand alone tools that give a graphical representation of the result as well. I tried using CMG biotools but it didn't prove to be of any help.

PROTEOME BLAST LINUX • 1.1k views
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4.9 years ago
Mo ▴ 920

I recommend pClust You can use the server here http://prodata.swmed.edu/pclust/server.cgi You can read about it here http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3590580/

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Thnaks a lot for your help Mo. But this server to accepts a single file at a time. I need to upload all the 70 proteomes in one go and perform BLAST .. Any suggestions ?

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@avinashdhar123 there you have single sequence and multi sequence tab, look at below "Input your query as"

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