Question: Mauve, SNP output empty in case of larger alignment
1
gravatar for AcoBetalow
2.1 years ago by
AcoBetalow10
AcoBetalow10 wrote:

Hi,

my question concerns extracting SNPs in Mauve from larger alignments (mine is 50 genomes, same species but quite diverse). When using alignment from a smaller subset (15 genomes) SNP extract works perfectly, but with all genomes the output file remains empty.

I let it run over night and the lack of CPU or memory doesn't seem to be the problem.

Is there a special way of dealing with larger alignments in Mauve? Are there any other ways to extract SNPs from Mauve alignment?

Thank you

Aco

snp mauve • 726 views
ADD COMMENTlink written 2.1 years ago by AcoBetalow10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 793 users visited in the last hour