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7.9 years ago
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Hello,
I have some genotype data that include insertions and deletions apart from rare variants. What is the best method to do an association analysis for indels?
Many thanks
Thank you, I think VAT should work for my GWAS genotype data
See also this papers, they look suitable to your needs.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661514/
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4067555/ - the second link in my previous list