Question: microRNA visulaization data track
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gravatar for rob.costa1234
4.7 years ago by
rob.costa1234260
United States
rob.costa1234260 wrote:

Is there a separate browser for microRNAs visualization? It is small RNA-seq data

track microrna • 859 views
ADD COMMENTlink modified 4.7 years ago by natasha.sernova3.8k • written 4.7 years ago by rob.costa1234260
0
gravatar for igor
4.7 years ago by
igor12k
United States
igor12k wrote:

The miRNAs come from the genome and can be aligned to the genome, so I am not sure a separate browser is necessary.

ADD COMMENTlink written 4.7 years ago by igor12k
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gravatar for Chirag Nepal
4.7 years ago by
Chirag Nepal2.3k
Copenhagen
Chirag Nepal2.3k wrote:

Map you small RNA-seq data, get BAM files, convert BAM to bigWig and visualize on UCSC genome browser.

ADD COMMENTlink written 4.7 years ago by Chirag Nepal2.3k

I have tried to visualize .tdf from bam as such in IGV/ UCSC browser but differences in two samples are hard to see nicely, even though there are significant differences in two samples. I am not getting the same quality visualization as I see with regular Chipseq/ RNAseq. The reason may be of there small size

ADD REPLYlink written 4.7 years ago by rob.costa1234260
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