Question

Motifs data base

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7.9 years ago

Ati ▴ 40

I have found some motifs using DREME. Is there any database to check whether these motifs report before in specific sequence or region?

Thanks

RNA-Seq Motifs DNA DREME • 1.8k views

ADD COMMENT • link updated 7.9 years ago by Girolamo ▴ 140 • written 7.9 years ago by Ati ▴ 40

score 2 · Answer 1 · 2016-05-11

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7.9 years ago

Girolamo ▴ 140

if the motifs are binding sites for RNA binding proteins i would suggest ATtRACT because is more updated, it contains more motifs, and all of them experimentally validated http://attract.cnic.es/ if you are interested: paper

ADD COMMENT • link 7.9 years ago by Girolamo ▴ 140

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Thanks a lot for your information

ADD REPLY • link 7.9 years ago by Ati ▴ 40

score 1 · Answer 2 · 2016-05-11

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7.9 years ago

UnivStudent ▴ 430

If they're RNA motifs try the motif scan in CIS-BP-RNA to find related motifs from RNA-binding proteins using Tomtom. If they're DNA try the motif scan in CIS-BP to find related motifs from TFs using Tomtom.