idba no response
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5.7 years ago
kelvinfrog75 ▴ 10

I am trying to run idba_ud but found it responded strangely. Here is my command line

\$ bin/idba_ud -r read.fa -o output_dir


but it finished almost instantly with this message. There is no assembly files in the output dir.

number of threads 4


Anyone knows what is going on?

Assembly • 846 views
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5.7 years ago
Sej Modha 5.0k

There is a typo in this command, there should not be any white spaces between - and o. -r parameter should be specified before input filename in fasta format.

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Thanks. They are just the typos when I wrote this question here. I corrected them here. But still it gave the same problem

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Did you try to specify --mink --max parameters?

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I did but still gave the same response