Apologies for such a basic question; I am new to proteomics data visualisation and want to make heat map of mass spec proteomics qualitative data. I have the data into two columns as follow:
log2 fold change protein IDs
So far I read and follow different published material as in publication (Melissa Key BMC Bioinf.2012 )(http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S16-S10).
Problem: Most of the times people working with the proteomics data have more columns (conditions), and that is a bit confusing for new comer like me who has data from only one condition,
Question: is there any software or R/python code to start with in displaying the above-mentioned data.
Thanks ! good day