How To Check Whole Genome With Bigwigsummary ?

Question

[Ar Es]

Hi,

I have question about bigwigsummary tools ,

I have my start and end positions and my bigwig file but I want to check whole genome instead of chromosome by chromosome Is there any option to use this tool in that way ?

I know that for each chromosome I have to use :

bigWigSummary -type=X bigwigfile chrN start end datapoints

I want to check from chr1 to chrX.

Thanks in Advance.

Answer 1

[Ian]

I am not sure it is possible to scan the whole genome in one go. Why not just use a bash script to run the script once for each chromosome.