Question: How To Check Whole Genome With Bigwigsummary ?
gravatar for Ar Es
8.3 years ago by
Ar Es0
Ar Es0 wrote:


I have question about bigwigsummary tools ,

I have my start and end positions and my bigwig file but I want to check whole genome instead of chromosome by chromosome Is there any option to use this tool in that way ?

I know that for each chromosome I have to use :

bigWigSummary -type=X bigwigfile chrN start end datapoints

I want to check from chr1 to chrX.

Thanks in Advance.

bedtools bigwig • 2.3k views
ADD COMMENTlink modified 6.0 years ago by Biostar ♦♦ 20 • written 8.3 years ago by Ar Es0
gravatar for Ian
8.3 years ago by
University of Manchester, UK
Ian5.7k wrote:

I am not sure it is possible to scan the whole genome in one go. Why not just use a bash script to run the script once for each chromosome.

ADD COMMENTlink written 8.3 years ago by Ian5.7k
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