Question: Gemini Installation pybedtools version error
gravatar for andrew.j.skelton73
3.7 years ago by
andrew.j.skelton735.9k wrote:


This may be a more StackOverflow question, but I'm installing Gemini and I've got an error I can't seem to fathom. I've ran the installation script and that went fine, but as soon as I start the test script, I get a pybedtools error:

Traceback (most recent call last):
  File "/usr/local/bin/gemini", line 4, in <module>
    import pkg_resources
  File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.14-py2.7.egg/", line 2675, in <module>
    parse_requirements(__requires__), Environment()
  File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.14-py2.7.egg/", line 552, in resolve
    raise DistributionNotFound(req)
pkg_resources.DistributionNotFound: pybedtools>=0.6.2

However, when running pip list I see:

pybedtools (0.7.7)

I have to admit that I don't use python often so I'm sure it's just some Pythony wizardry that I'm missing out on. Any advice?


gemini • 1.1k views
ADD COMMENTlink written 3.7 years ago by andrew.j.skelton735.9k

Open an issue with the Gemini issue tracker

ADD REPLYlink written 3.7 years ago by Matt Shirley9.2k

Already have, I was just wondering if anyone with more Python experience could pick up on somewhere I went wrong.

ADD REPLYlink written 3.7 years ago by andrew.j.skelton735.9k
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