Gene fusion (chimera) with LINE1
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5.4 years ago
dmemoli • 0

Dear all,

I want to find the fusion (chimera) between gene and line1.

I have a RNA-Seq experiment in PE mode 2x100.

Is there any pipeline or have you any idea for discover this fusion?

Best regards, Domenico.

PS: I tested tophat fusion with a transcripts gtf and repeat region (repeat masker) but with poor results.

RNA-Seq Line1 Chimera Retrotrasposon Gene Fusion • 1.0k views
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