I have raw paired-end fastqc files of read length (151 bases). I would like to trim off last 50 bases and would like to keep just 101 bases from each read. I used following command to perform the activity. Am I missing something or good to go?
Currently the program is running, I couldn't see the output. But I would like to about the parameters I have used.
java -jar trimmomatic-0.32.jar -threads 6 PE -phred33