Question: Comparing diversity between two paralogs using a VCF file
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gravatar for cfourps
2.9 years ago by
cfourps0
cfourps0 wrote:

I'm looking at two homeologs and trying to gain information about their potentially different evolutionary rates. There is a publicly available dataset in the form of a VCF file from whole genome sequencing of many different cultivars. Is there a way to get nucleotide diversity (and calculate for coding sequence, synonymous, nonsynonymous etc) or Ka/Ks values for the two paralogs?

ADD COMMENTlink modified 2.7 years ago by Biostar ♦♦ 20 • written 2.9 years ago by cfourps0
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