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• Genomic Positions Of 3'Utrs Of Refseq-Genes
  Dear all, I want to get the genomic positions of 3'UTR of RefSeq genes, but I don't know how to ...
• Get one maximum UTR per gene
  I have a list of about 3,000 genes and I want to retrieve the genomic locus of each gene's 3' UTR...
• SNPs in UTR
  Dear All, I am looking for a way to find the SNPs (rsID like "rs559632360") in the 3' and 5' UTR...
• 5"UTR and 3"UTR of Nile Tilapia Genome (Oreochromis niloticus)
  Dear all, I am looking for the annotations of 5'UTR and 3'UTR of the tilapia genome. I went to U...
• RefSeq Transcript without a 5'UTR?
  I'm defining exon and intron positions using the RefSeq table from UCSC. The raw table is formatt...
• UTR size range for 5' UTR & 3' UTR variants
  Hello Biostars, What should be the size range of UTRs at 5' & 3' end so that if a variant fa...
• Converting regions based on gene start , body , end site ,... to promoter ,exon, intron
  Hi I have some regions which are divided based on 1Exon, 5'UTR, 3'UTR, Body and TSS. How can i r...
• Transcriptomic features of peaks at mature mRNA level
  Hi, I have a list of peaks that I want to map into genome and get different genomic features. I ...
• Mapping Genome Coordinates From Ensembl Biomart Fasta Header To Sequence
  Hello everybody, I queried a FASTA file containing all 3' UTRs of the current human genome assem...
• Count 5'End Mapped To A Specific Genomic Position
  I got several SAM/BAM files, and I am interested in 5'ends of the mapped reads. Is there any tool...
• How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
  Hi all, I want to extract the genomic region of 3'UTR and 5'UTR from the GENCODE gtf annotation ...
• 5'UTR in bacterial genomes
  The gene coordinates table for E.coli looks like the following :   orientation star...
• retrieving refseq/ucsc transcription start site with 1kb up- and downstream flank?
  Hi!  I need to plot some genomic locations in context of their distances from transcription star...
• How to get all start and end positions of promoters in All the human genome ?
  Hello, I'm wondering how to get the start and the end positions of all promoters in all human ch...
• Ensembl BioMart - How to get Transcript IDs version increment?
  Hello, I am trying to access information on genomic 3'UTR end and start positions using the Ense...
• how to annotate a genomic internval with its gene ID, sequence, seq-type
  Hi All: It is very excited for my very first post here. I have a simple question: Given a geno...
• SNP position in UTRs
  Dear All, I am trying to get the **positions** of the SNPs present in the 5' and 3' UTRs of the ...
• How can I get the sequence of 5' and 3' UTR regions of bacterial genome?
  Hi there, Is there any software tool or database to identify the entire 5' and 3' UTR regions of ...
• Doubt using HOMER annotatePeaks.pl
  Hi all, I've tried to annotate MACS2 ChIP-seq peaks using HOMER annotatePeaks.pl. I have just gi...