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• find position of 3' utr at entrez
  Hi I am using the BIOPYTHON library Bio to retrieve sequences from Entrez, I need to know the ...
• Genomic Positions Of 3'Utrs Of Refseq-Genes
  Dear all, I want to get the genomic positions of 3'UTR of RefSeq genes, but I don't know how to ...
• how to get distance of each SNPs to the transcripts' 5'UTR and 3'UTR?
  Hi all, I have a SNPs list which are inside of different transcripts respectively(I have thei...
• Get one maximum UTR per gene
  I have a list of about 3,000 genes and I want to retrieve the genomic locus of each gene's 3' UTR...
• SNPs in UTR
  Dear All, I am looking for a way to find the SNPs (rsID like "rs559632360") in the 3' and 5' UTR...
• 5"UTR and 3"UTR of Nile Tilapia Genome (Oreochromis niloticus)
  Dear all, I am looking for the annotations of 5'UTR and 3'UTR of the tilapia genome. I went to U...
• RefSeq Transcript without a 5'UTR?
  I'm defining exon and intron positions using the RefSeq table from UCSC. The raw table is formatt...
• genomic features 3'utr and 5'utr
  Hello, I am having some troubles using genomicFeatures R's package. Basically I am trying to retr...
• UTR size range for 5' UTR & 3' UTR variants
  Hello Biostars, What should be the size range of UTRs at 5' & 3' end so that if a variant fa...
• Mapping sequencing reads to 5-UTR, 3-UTR and CDS using Ensembl GTF files
  Hi, I want to determine the percentage of reads that map to the 5´UTR, 3´UTR and CDS of my seque...
• Converting regions based on gene start , body , end site ,... to promoter ,exon, intron
  Hi I have some regions which are divided based on 1Exon, 5'UTR, 3'UTR, Body and TSS. How can i r...
• The best pacakge to annotate a set of regions
  Looking for recommendations here~ I have a set of transcription start sites (TSS) called from a n...
• Transcriptomic features of peaks at mature mRNA level
  Hi, I have a list of peaks that I want to map into genome and get different genomic features. I ...
• Mapping Genome Coordinates From Ensembl Biomart Fasta Header To Sequence
  Hello everybody, I queried a FASTA file containing all 3' UTRs of the current human genome assem...
• Count 5'End Mapped To A Specific Genomic Position
  I got several SAM/BAM files, and I am interested in 5'ends of the mapped reads. Is there any tool...
• Searching for introns within 5'UTRs
  Hi everybody! I am looking for the best way to find the **sequences of introns that are located ...
• How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
  Hi all, I want to extract the genomic region of 3'UTR and 5'UTR from the GENCODE gtf annotation ...
• 5'UTR in bacterial genomes
  The gene coordinates table for E.coli looks like the following :   orientation star...
• retrieving refseq/ucsc transcription start site with 1kb up- and downstream flank?
  Hi!  I need to plot some genomic locations in context of their distances from transcription star...