I am using GlimmerHMM to identify the protein coding genes in a fungal genome. As the present trained set do not contain any fungal genome so I have to train my own model. In order to do this I am running the trainGlimmerHMM program.
It is giving me following error which I am unable to troubleshoot,
sh: line 1: 725252 Segmentation fault (core dumped) /HOME/swatis/bin/GlimmerHMM/train/build-icm < orfs_0_100 > coding_0_100.model ERROR 74: /HOME_ann/swatis/bin/GlimmerHMM/train/build-icm exited funny: 35584 at ../../train/trainGlimmerHMM line 614.