Question: trainGlimmerHMM Error while training a genome
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gravatar for swati.6783
4.3 years ago by
swati.678310
Singapore
swati.678310 wrote:

I am using GlimmerHMM to identify the protein coding genes in a fungal genome. As the present trained set do not contain any fungal genome so I have to train my own model. In order to do this I am running the trainGlimmerHMM program.

It is giving me following error which I am unable to troubleshoot,

sh: line 1: 725252 Segmentation fault (core dumped) /HOME/swatis/bin/GlimmerHMM/train/build-icm < orfs_0_100 > coding_0_100.model ERROR 74: /HOME_ann/swatis/bin/GlimmerHMM/train/build-icm exited funny: 35584 at ../../train/trainGlimmerHMM line 614.

Any help!!

software error • 1.3k views
ADD COMMENTlink modified 3.1 years ago by wn13640 • written 4.3 years ago by swati.678310
0
gravatar for wn1364
3.1 years ago by
wn13640
wn13640 wrote:

i got the same error with u. then i checked my inputfile ,found the my gff file format was wrong。

ADD COMMENTlink written 3.1 years ago by wn13640
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