Question: gff3 to gtf
0
gravatar for luanabarbos
4.8 years ago by
luanabarbos0 wrote:

Hi guys,

I need to convert a gff3 file to gtf to use at tophat. I tried to convert using the gffread ( came with Cufflinks), but it didn't work. Could anyone help me with this?

next-gen gff gtf • 3.0k views
ADD COMMENTlink modified 3.6 years ago by grant.hovhannisyan2.0k • written 4.8 years ago by luanabarbos0

Which species is this data in GFF3 format for? I wonder if a GTF is not already available out there...

ADD REPLYlink written 4.8 years ago by Denise CS5.1k
0
gravatar for Jean-Karim Heriche
4.8 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche24k wrote:

Have a look at this older post. There also seems to be a Galaxy tool for this.

ADD COMMENTlink written 4.8 years ago by Jean-Karim Heriche24k
0
gravatar for grant.hovhannisyan
3.6 years ago by
grant.hovhannisyan2.0k wrote:

Gffread utility from Cufflinks is what you need. What was your command line for it that did not work?

ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by grant.hovhannisyan2.0k
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