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• phytozome gtf file
  Hi, I have the phytozome Maize gff3 file but when I use gffread to convert to gtf something goe...
• Convertion Of Gff3 To Gtf
  How do I convert GFF file to a GTF file? Is there any tool available ?    
• Cufflinks GTF To Gbrowse GFF3
  Which script do you use to convert cufflinks GTF output to GFF3 output suitable to upload to Gbro...
• GFF3 to GTF
  I'm tryning to convert a c elegans mirBase gff3 file to gtf file with gffread (by cufflinks) but ...
• gff3 to gtf conversion
  I need to convert .gff3 to .gtf file. Any suggestions on how to do it? I tried gffread and got an...
• How do I convert Hisat2 + stringtie gtf to EVM compatible gff3
  Hi, I aligned my rnaseq to the genome using hisat2 and obtained gtf file using stringtie. Now ho...
• Convert .gbff (gene bank flat format) to gff3, gtf
  As an example, I'm working with a reference genome for pineapple and need a GTF and GFF file. Th...
• How to create custom gtf annotation file?
  Hi I am using RSEM (with bowtie2) for alignment then gene count. Using Refseq Annotation (gff3),...
• How to convert a gff3 to gtf?
  Hi all, I got a gff3 hsa miRNA annotation file from mirBase. I need to convert it to gtf . I tri...
• Using ensembl genomes and gtf conversion
  Hi, I'm trying to align my RNA-seq data to an E coli reference genome that I downloaded from Ens...
• Converter for GFF file downloaded from NCBI to GTF
  Hi all, I have been looking at different gff3 to gtf converters, but cannot find a good one that...
• How to convert .gff3 to .gff
  Please tell me how to convert .gff3 to .gff. I would like to use Gff2GeneTable function in cluste...
• Convert STAR sjdb to gtf
  The RNA-seq aligner STAR can use annotation data to generate genomes. These data can be in gtf, g...
• How can I convert GFF3 to GFF file using rtracklayer package?
  Hi everyone. I'm trying to convert a GFF3 annotation file to GFF format, using the command lines ...
• use gff3 file with featureCount
  I use tophat do the mapping and get .bam file. I try to use featureCount. Here are some question ...
• Script for getting summary statistic of any genome using GTF or GFF3 ?
  Hi All, Nowadays, I am looking for a script for obtaining summary statistics such as; transcript...
• Join/Combine gff3 or gtf files
  Hi, I am trying to assemble/join gff3 or gtf files from 2 different organisms to use as a refere...
• Convert gff3 to gtf with R or shell
  Hi, I have gff3 file in the following format: #gff-version 3 ##sequence-region Chromo...
• gffread error when converting gff to gtf
  Hi, I'm trying to get differential splicing information from some RNA reads using leafcutter. My ...
• GFF3 to BED using Python
  how to transform GFF3 format to BED format using Python? and how to convert a gene features colum...