Question: Quake Coverage Cutoff output
0
gravatar for Seigfried
4.1 years ago by
Seigfried70
Seigfried70 wrote:

Hello I am trying to run the Coverage cutoff module of Quake Error Corrector. i get output files called cutoff.txt and kmers.hist

My Cutoff.txt output is as follow:

1 zp.copy: 0.8268095 p.e: -50570.72 shape.e: 253.7109 u.v: 73.32117 var.v: 507.014 -18066.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Can anyone help me understand this file? I could not find anything on the manual and my result seems ambiguous. Is my coverage cutoff value 1?

cov_model.py quake • 840 views
ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by Seigfried70
1

At the bottom of your cov_cutoff_"kmer_size" file you you should see 'Cutoff: #'. That number should be your cutoff value given the value of the kmer you used.

ADD REPLYlink written 4.1 years ago by st.ph.n2.5k
0
gravatar for Seigfried
4.1 years ago by
Seigfried70
Seigfried70 wrote:

the current Cov_model lists the CUtoff at the end on the command line.

In the file produced the cutoff is the "1" the first number in the file.

ADD COMMENTlink written 4.1 years ago by Seigfried70
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