Strange P(Simul Fst<sample Fst) values in LOSITAN

Question

[estunz]

Hello,

I am working with a data set of ~1,200 SNPs across 6 populations of one plant species. While LOSITAN appears to read the genepop file and quickly print results, many of the loci are given a -100 P (Simul Fst < sample Fst) value. Is this due to missing data across populations at these loci?

Any suggestions are appreciated. Thanks.

Answer 1

[Zev.Kronenberg]

You can now permute Fst values in VCFLIB.