Question: Strange P(Simul Fst<sample Fst) values in LOSITAN
0
gravatar for estunz
3.1 years ago by
estunz0
estunz0 wrote:

Hello,

I am working with a data set of ~1,200 SNPs across 6 populations of one plant species. While LOSITAN appears to read the genepop file and quickly print results, many of the loci are given a -100 P (Simul Fst < sample Fst) value. Is this due to missing data across populations at these loci?

Any suggestions are appreciated. Thanks.

next-gen • 921 views
ADD COMMENTlink modified 2.9 years ago by Zev.Kronenberg11k • written 3.1 years ago by estunz0
0
gravatar for Zev.Kronenberg
2.9 years ago by
United States
Zev.Kronenberg11k wrote:

You can now permute Fst values in VCFLIB.

ADD COMMENTlink written 2.9 years ago by Zev.Kronenberg11k
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