Question: R-cummeRbund - fpkmSCVPlot
0
gravatar for Yunlong JIA
3.0 years ago by
Yunlong JIA10
France/Lyon/LYON1
Yunlong JIA10 wrote:

I just used the cummeRbund, all steps according to the official manual.

> library(cummeRbund)
 >cuff<-readCufflinks(gtfFile = "cuffcmp.combined.gtf",genome="hg38")
 > cuff

But when I run:

> genes.scv<-fpkmSCVPlot(genes(cuff))

always output a wrong:

Scale for 'x' is already present. Adding another scale for 'x', which will replace the existing scale.

I can't find the parameter, where could I set the scale x, maybe someone could tell me.

Any help would be greatly appreciated. Thanks

rna-seq cummerbund • 1.1k views
ADD COMMENTlink written 3.0 years ago by Yunlong JIA10

Looks like a minor warning, do you get a result? I would report it to the author of the package or on https://support.bioconductor.org/.

ADD REPLYlink written 3.0 years ago by Michael Dondrup46k

Thank you, I haven't the result caused by this warning.. Yeah, you are right, I should browser the site you gave, it's more specific. This question also posted by others, but no solved yet by far.

ADD REPLYlink written 3.0 years ago by Yunlong JIA10
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