Entering edit mode
7.8 years ago
xcalle91
▴
20
Hi!
I have a big list of mutated amino acid positions, for each mutation I also have the related gene. I would like to end up with a bed file with all chromosome locations for each mutation. Given a position of an Amino acid, how can I get the chromosome location?
Example:
input:
Amino acid Gene
54 EGFR
output:
chr start end Gene
1 1234 1235 EGFR
I tried by multiply the length of the coding region of the gene by the Aa position. I realized that this is not correct as I'm not assuming the introns...
thanks in advantage