Entering edit mode
7.8 years ago
igor
13k
Is there an R package that can generate read density plots that are commonly used for ChIP-seq profiles? I know there are a few command-line tools like deepTools, but I would like to have a little more flexibility. It can probably be done using GenomicRanges and rtracklayer, but I am guessing there is already a package that streamlines the process. Any suggestions are welcome.
Examples: