Question: read density plot in R
0
gravatar for igor
3.6 years ago by
igor9.1k
United States
igor9.1k wrote:

Is there an R package that can generate read density plots that are commonly used for ChIP-seq profiles? I know there are a few command-line tools like deepTools, but I would like to have a little more flexibility. It can probably be done using GenomicRanges and rtracklayer, but I am guessing there is already a package that streamlines the process. Any suggestions are welcome.

Examples: enter image description here enter image description here

plot visualization R • 1.8k views
ADD COMMENTlink modified 3.6 years ago by Sinji3.0k • written 3.6 years ago by igor9.1k
1
gravatar for Sinji
3.6 years ago by
Sinji3.0k
UT Southwestern Medical Center
Sinji3.0k wrote:

ChIPseeker, Genomation, and SeqPlots might be good places to start.

ADD COMMENTlink written 3.6 years ago by Sinji3.0k
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