Hi, I have a binary matrix which I would like to create a dendrogram with bootstrapping values. Each row of my matrix is an dependent variable and each column is an independent variable of which I have 49 and the first column is the names of the dependent variables so I've excluded this from the clustering so NAs aren't introduced.
I've used pvclust but wanted to check I was doing the right thing. I haven't got any error messages but wanted to check my code so that it's doing what I think it's doing!
pv<-pvclust(data2[2:50], method.hclust="average", method.dist="binary", use.cor="all.obs", nboot=1000, parallel=FALSE, r=seq(.5,1.4,by=.1), store=FALSE, weight=FALSE, iseed=NULL, quiet=FALSE) plot(pv, hang=-1)