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7.9 years ago
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Is there any Tool that can be used to calculate frequency (MAF) by using rs ids of snps?
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MAF in your cohort (VCF)? Otherwise, you can use EXAC database or dbSNPs.
Can you provide with me guideline that how can I use dbSNPs or EXAC Database?
Yes, I recommend trying Variant Effect Predictor because you can get frequency broken out by subpopulation. Link is here:
http://useast.ensembl.org/Tools/VEP
Can submit one or a list of rsids.