Question: calculating frequency of snps
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gravatar for 12021560-040
3.8 years ago by
12021560-04060
Pakistan
12021560-04060 wrote:

Is there any Tool that can be used to calculate frequency (MAF) by using rs ids of snps?

snps frequency • 1.5k views
ADD COMMENTlink written 3.8 years ago by 12021560-04060

MAF in your cohort (VCF)? Otherwise, you can use EXAC database or dbSNPs.

ADD REPLYlink written 3.8 years ago by MAPK1.5k

Can you provide with me guideline that how can I use dbSNPs or EXAC Database?

ADD REPLYlink written 3.8 years ago by 12021560-04060

Yes, I recommend trying Variant Effect Predictor because you can get frequency broken out by subpopulation. Link is here:

http://useast.ensembl.org/Tools/VEP

Can submit one or a list of rsids.

ADD REPLYlink written 3.8 years ago by Vincent Laufer1.1k
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