Question: is there any software designed for the VCF file similarity search?
1
gravatar for hrenchert747
2.9 years ago by
hrenchert74750
hrenchert74750 wrote:

Is there any software designed for the VCF file similarity search? Or the software for WGS similarity search using .bam/.sam and fastq files?

wgs vcf • 852 views
ADD COMMENTlink modified 2.9 years ago by harold.smith.tarheel4.3k • written 2.9 years ago by hrenchert74750
0
gravatar for harold.smith.tarheel
2.9 years ago by
United States
harold.smith.tarheel4.3k wrote:

BEDtools can be used to compare VCFs and identify the common and unique variants between files.

ADD COMMENTlink written 2.9 years ago by harold.smith.tarheel4.3k

Thx, what functions to use and could you show a case example of data processing?

ADD REPLYlink written 2.9 years ago by hrenchert74750

The 'intersect' command gives the common variants, and 'subtract' the unique ones. Examples of command usage are shown at the BEDtools link I provided.

ADD REPLYlink written 2.9 years ago by harold.smith.tarheel4.3k
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