RNA-Seq Expression Project for Oncology

Question

[zizigolu]

Hi,

do you know a repository or GEO accession to access something like GSE2109 but for RNA-Seq???

GSE2109 is array based cancerous samples

I was searching for a large amount of cancerous samples where I found many in microarray for example GSE2109 contains more than 2000 CEL files. I am asking about a similar accession or repository for RNA-Seq samples.

thank you

[Ar]

Didn't understand your question.

[zizigolu]

Sorry, I mean I was searching for a large amount of cancerous samples where I found many in microarray for example GSE2109 contains more than 2000 CEL files. I am asking about a similar accession or repository for RNA-Seq samples.

Thank you

[Ar]

Check TCGA portal.

Answer 1

[EagleEye]

This is quantified expression for TCGA dataset,

RNA-Seq data for 9264 tumor samples and 741 normal samples across 24 cancer types from The Cancer Genome Atlas with "Rsubread"

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944