Question: RNA-Seq Expression Project for Oncology
0
gravatar for F
2.9 years ago by
F3.4k
Iran
F3.4k wrote:

Hi,

do you know a repository or GEO accession to access something like GSE2109 but for RNA-Seq???

GSE2109 is array based cancerous samples

I was searching for a large amount of cancerous samples where I found many in microarray for example GSE2109 contains more than 2000 CEL files. I am asking about a similar accession or repository for RNA-Seq samples.

thank you

rna-seq • 709 views
ADD COMMENTlink modified 2.9 years ago by EagleEye6.3k • written 2.9 years ago by F3.4k
1

Didn't understand your question.

ADD REPLYlink written 2.9 years ago by Ar830

Sorry, I mean I was searching for a large amount of cancerous samples where I found many in microarray for example GSE2109 contains more than 2000 CEL files. I am asking about a similar accession or repository for RNA-Seq samples.

Thank you

ADD REPLYlink written 2.9 years ago by F3.4k
1

Check TCGA portal.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by Ar830
2
gravatar for EagleEye
2.9 years ago by
EagleEye6.3k
Sweden
EagleEye6.3k wrote:

This is quantified expression for TCGA dataset,

RNA-Seq data for 9264 tumor samples and 741 normal samples across 24 cancer types from The Cancer Genome Atlas with "Rsubread"

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944

ADD COMMENTlink written 2.9 years ago by EagleEye6.3k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 672 users visited in the last hour