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7.8 years ago
QVINTVS_FABIVS_MAXIMVS
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I have a list of CNVs in BED format and I would like to annotate as likely disrupting accessible DNA regions.
I assume that a naive intersection is not good enough. What are some approaches in annotating genomic positions to DNAse-seq peaks from ENCODE?
Or should I be working with different data, like the BAM files?