I would like to find a correlation between my metagenomic results from Qiime (otu_table.biom) and some clinical data.
Any suggestion how to do that?
Is there a tool that can make some plots? Or should I run some stats by myself?
I was trying to run:
make_otu_heatmap.py -i otu_table.biom -o heatmap_grouped_by_Treatment.pdf -m mapping_file.txt -c Treatment
but it seems there is a bug and it's impossible to do that.
Thanks in advance,