Question to clear up the confusion.. I am comparing the genotypes of rsIDs from the 23andme files versus the genotypes from snpedia.
23andme file for individual X:
on snpedia (for rs4988235):
on snpedia (for rs9939609):
after making some comparisons the results (i.e. the results i deduced):
if you noticed, in case of rs4988235 i flipped (i.e. converted) the genotype AA to TT because SNPedia shows that the orientation is minus, whereas i didn't flip the genotype for the rs9939609 because the orientation is plus.
So my question is, am I doing it the right way? I apologize if my question is naive, my background is in computer science not genomics.