I have a VCF file that has no DP info only AD (allelic depth). Does anyone know of a way that I can get per sample mean read depth using only the AD filter?
I could write a custom script that sums the two AD values for each site, but I'd be more comfortable if there was a standard tool available (and it would save a lot of time).
example for two individuals:
GT:AD 0|1:6,5 0|0:12,0
Thank in advance!